Genomic REML without forming the covariance matrix23 days ago
What an iteration needs | A worked example | Accuracy over many data sets | Scaling | Choosing the settings | Limitations | References
No articles match
Randomized matrix computations with matsketch23 days ago
Approximating a kernel matrix from a few of its columns | Estimating a trace from matrix-vector products | Solving regularized linear systems | Variance components on a genomic relationship matrix | References
Getting started with AgriFusionR2 months ago
The problem this package addresses | The unit of analysis | Attaching covariates | Thermal time and phenological windows | Building the design matrix | Checking before modelling | Training | Uncertainty | Does it hold on real data? | Explaining | Reporting | Extending
Breeding data and relationship matrices3 months ago
The demonstration data | Quality control | Relationships from the pedigree | Relationships from the markers | Combining both: the single-step matrix | Session information
Breeding data and relationship matrices3 months ago
The demonstration data | Quality control | Relationships from the pedigree | Relationships from the markers | Combining both: the single-step matrix | Session information
Getting started with orbis3 months ago
The grammar | Layers | Small multiples | Scales | Maps | Output | What orbis does not do yet
Benchmarking genomic prediction models with GSbench4 months ago
A simulated dataset | Quality control | GBLUP and the genomic relationship matrix | One interface for many models | Cross-validation, done correctly | A stacked ensemble | Benchmarking everything at once
Profiling a dataset with dataProfilerR4 months ago
A deliberately messy dataset | One call to profile it | Drilling in with summary() | The object is just a list | Figures | Tuning the run | Beyond correlation (0.2.0) | A full HTML report