Package: GSbench Title: Benchmarking Genomic Selection and Machine-Learning Prediction Models Version: 0.1.0 Authors@R: person("Muhammad", "Farooqi", email = "mqfarooqi@gmail.com", role = c("aut", "cre")) Description: A unified interface to fit, cross-validate and benchmark genomic prediction models from SNP marker data. It implements genomic best linear unbiased prediction (GBLUP) and ridge-regression BLUP in base R, and offers a common interface to machine-learning predictors (elastic net, random forest and gradient boosting) through optional packages, together with a stacked ensemble. Cross-validation uses breeding-relevant schemes and reports prediction accuracy honestly, so models can be compared fairly. The genomic relationship matrix follows VanRaden (2008) ; the mixed-model solver follows Endelman (2011) ; the genomic-selection framework follows Meuwissen, Hayes and Goddard (2001) . License: MIT + file LICENSE Encoding: UTF-8 Language: en-GB Depends: R (>= 4.1.0) Imports: graphics, stats, withr Suggests: rrBLUP, glmnet, ranger, xgboost, testthat (>= 3.0.0), knitr, rmarkdown, spelling VignetteBuilder: knitr URL: https://github.com/mqfarooqi1/GSbench, https://mqfarooqi1.github.io/GSbench/ BugReports: https://github.com/mqfarooqi1/GSbench/issues Config/Needs/website: pkgdown Config/testthat/edition: 3 Roxygen: list(markdown = TRUE) Config/roxygen2/version: 8.0.0 Repository: https://mqfarooqi1.r-universe.dev Date/Publication: 2026-06-25 06:18:23 UTC RemoteUrl: https://github.com/mqfarooqi1/GSbench RemoteRef: HEAD RemoteSha: fd122df38dd03d704f25164287277dff83c33e89 NeedsCompilation: no Packaged: 2026-06-25 08:30:17 UTC; root Author: Muhammad Farooqi [aut, cre] Maintainer: Muhammad Farooqi